Summer Intern -Genomic Characterisation of Sheep Immune Function Using Targeted Long-Read Sequencing

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Location: Invermay, Dunedin, New Zealand

Fixed Term – 12 weeks

Hours: 40 hours

Summer Student Intern – Genomic Characterisation of Sheep Immune Function Using Targeted Long-Read Sequencing 

Grow your research skills in a world-class science environment

Understanding the genetic basis of disease resistance in livestock is critical for improving animal health, productivity, and resilience. This project will develop a targeted long-read sequencing panel to investigate immunocompetence in sheep by identifying key immune-related genes and genomic regions associated with disease resistance. Using sheep pangenome resources and genomic databases, the project will design a sequencing panel capable of detecting both single nucleotide polymorphisms (SNPs) and complex structural variants that may influence health traits. The internship offers a unique opportunity to work at the intersection of livestock genetics, genomics, bioinformatics, and advanced sequencing technologies.

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What you will be doing | Ngā whāinga matua

• Review scientific literature and genomic resources to identify candidate immune-related genes and genomic regions associated with sheep health and disease resistance.
• Analyse sheep pangenome datasets to investigate genetic diversity and prioritise targets for panel development.
• Design and assess capture probes for targeted long-read sequencing of SNPs and structural variants.
• Perform bioinformatic analyses to validate target regions, assess probe performance, and interpret sequencing data.
• Assist with laboratory workflows including DNA quality assessment, library preparation, sequencing panel testing, and reporting of findings.
• Learn from experienced researchers in a collaborative scientific environment.

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What you will bring | Ngā tino pūkenga me ngā wheako

To be successful in this role, the minimum qualifications required are:

• Currently enrolled in, or recently completed, an undergraduate degree in genetics, genomics, bioinformatics, molecular biology, biotechnology, immunology, animal science, computer science, or a related field.
• An interest in livestock genomics, genetics, animal health, bioinformatics, immunology, or biotechnology.
• Strong analytical skills and attention to detail.
• Ability to work independently and collaboratively within a research team.
• Good written and verbal communication skills.
• Motivation to learn new laboratory and research techniques.

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Why join us?

This internship provides the opportunity to contribute to cutting-edge research that could help improve livestock health and productivity through genomic technologies. Working alongside experienced scientists, you will develop skills in bioinformatics, genomics, and laboratory research while gaining exposure to advanced sequencing approaches that are transforming animal breeding and genetic research. The project offers valuable experience for students considering careers in genomics, biotechnology, animal science, data science, or research.

A copy of the Position Description is available for you to view here.

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What you will get | Ngā hua o tēnei tūranga

• Exposure to a professional research environment.
• Practical experience with plant and soil science research, laboratory techniques, and experimental systems.
• Mentoring and support from experienced scientists.
• Opportunities to strengthen your scientific communication and data analysis skills.
• Valuable experience to support future study and career opportunities in science.

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About us | Ko wai mātou

We've built something new.  AgResearch, Manaaki Whenua – Landcare Research, Plant & Food Research and Scion have come together to form the Bioeconomy Science Institute. We are more than 2200 people working to support the growth and resilience of the bioeconomy in New Zealand and beyond.

Together, our world-class science can do more to advance innovation in agriculture, horticulture, forestry, aquaculture, biotechnology and manufacturing; protect and enhance ecosystems from biosecurity threats and climate risks; and develop new bio-based technologies and products.

For further details about the Bioeconomy Science Institute can be found on our website, watch this Bioeconomy Science Institute short clip.  

Ready to Apply? | Kua rite koe ki te tono?

If you're enthusiastic about science and keen to apply your studies in a research setting, we'd love to hear from you. Bring your curiosity, motivation, and willingness to learn, and join us for an exciting summer research experience.